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rqt

rqt

rqt is a tool for the meta-analysis of genome-wide association study (GWAS) data.

Topic

GWAS study; Genetics; Genetic variation

Details

  • Operation: Sequence feature detection
  • Software interface: Command-line user interface; Library
  • Language: R
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: GNU General Public License v>=2
  • Cost: Free
  • Version name: 1.2.2
  • Credit: The National Institute on Aging of the National Institutes of Health (NIA-NIH).
  • Contact: ilya.zhbannikov _at_ duke.edu
  • Collection: Bioconductor

Publications

Zhbannikov IY, Arbeev KG, Yashin AI "rqt: an R package for gene-level meta-analysis." Bioinformatics 2017; 33(19):3129-3130 https://doi.org/10.1093/bioinformatics/btx395
PMID: 28633423
PMCID: PMC5860520


Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J1, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M "Orchestrating high-throughput genomic analysis with Bioconductor." Nat Methods. 2015 Feb;12(2):115-21. https://doi.org/10.1038/nmeth.3252
PMID: 25633503
PMCID: PMC4509590


Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JY, Zhang J. "Bioconductor: open software development for computational biology and bioinformatics." Genome Biol. 2004;5(10):R80. Epub 2004 Sep 15. https://doi.org/10.1186/gb-2004-5-10-r80
PMID: 15461798
PMCID: PMC545600


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