A tool for genotype imputation for non-model organisms. The LinkImpute algorithm works on unphased data from heterozygous species. It uses the k-nearest neighbor genotype imputation technique (LD-kNNi) and does not require physical or genetic maps. LinkImpute is available in two versions, Java and as an R package. Other names: LinkImputeR.
Population genetics
Money D, Gardner K, Migicovsky Z, Schwaninger H, Zhong GY, Myles S "LinkImpute: Fast and Accurate Genotype Imputation for Nonmodel Organisms." G3 (Bethesda). 2015 Sep 15;5(11):2383-90. https://doi.org/10.1534/g3.115.021667
PMID: 26377960
PMCID: PMC4632058
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