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ParaHaplo

ParaHaplo

ParaHaplo is a tool for genotype imputation and reconstruction of haplotypes. The ParaHaplo algorithm uses parallel computing.

Topic

Population genetics

Details

  • Operation: Phasing; Imputation
  • Software interface: Command-line user interface
  • Language: C
  • Operating system: Microsoft Windows, Mac OS X, Linux
  • License: Not stated
  • Cost: Free
  • Version name: 4.0
  • Maturity: beta
  • Credit: Ministry of Education, Culture, Sports, Science and Technology (MEXT), the Research Project for Personalized Medicine (MEXT).
  • Contact: Kazuharu Misawa kazumisawa _at_ riken.jp | kamatani _at_ msb.biglobe.ne.jp Naoyuki Kamatani
  • Collection: -

Publications

Misawa K, Kamatani N "ParaHaplo 3.0: A program package for imputation and a haplotype-based whole-genome association study using hybrid parallel computing." Source Code Biol Med. 2011 May 24;6(1):10. https://doi.org/10.1186/1751-0473-6-10
PMID: 21609440
PMCID: PMC3123186

Misawa K, Kamatani N "ParaHaplo: A program package for haplotype-based whole-genome association study using parallel computing." Source Code Biol Med. 2009 Oct 21;4:7. https://doi.org/10.1186/1751-0473-4-7
PMID: 19845960
PMCID: PMC2774321

Misawa K, Kamatani N "ParaHaplo 2.0: a program package for haplotype-estimation and haplotype-based whole-genome association study using parallel computing." Source Code Biol Med. 2010 Jun 4;5:5. https://doi.org/10.1186/1751-0473-5-5
PMID: 20525312
PMCID: PMC2892495

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