TagIt

TagIt is a tool to select single nucleotide polymorphism (SNP) from 26 population reference panels to increase the accuray of genotype imputation.

Topic

Population genetics

Details

Operation: SNP detection
Software interface: Command-line user interface
Language: C++
Operating system: Linux
License: GNU General Public License v3

Cost

Version name: 1.0.8

Maturity:

Credit: the Office of Research Infrastructure under award number S10OD018522, the Office of Research Infrastructure under award number S10OD018522, he National Institutes of Health.
Contact: Christopher R Gignoux chris.gignoux _at_ ucdenver.edu | Eimear E. Kenny eimear.kenny _at_ mssm.edu
Collection: -

Publications

Wojcik GL, Fuchsberger C, Taliun D, Welch R, Martin AR, Shringarpure S, Carlson CS, Abecasis G, Kang HM, Boehnke M, Bustamante CD, Gignoux CR, Kenny EE "Imputation-Aware Tag SNP Selection To Improve Power for Large-Scale, Multi-ethnic Association Studies." G3 (Bethesda). 2018 Oct 3;8(10):3255-3267. https://doi.org/10.1534/g3.118.200502
PMID: 30131328
PMCID: PMC6169386

Download and documentation

Source: https://github.com/statgen/TagIt/tree/ma
ster/src
Home page: https://github.com/statgen/TagIt

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TagIt

TagIt

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Details

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Download and documentation

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