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TagIt

TagIt

TagIt is a tool to select single nucleotide polymorphism (SNP) from 26 population reference panels to increase the accuray of genotype imputation.

Topic

Population genetics

Details

  • Operation: SNP detection
  • Software interface: Command-line user interface
  • Language: C++
  • Operating system: Linux
  • License: GNU GPL v3
  • Cost: Free
  • Version name: 1.0.8
  • Maturity: Stable
  • Credit: the Office of Research Infrastructure under award number S10OD018522, the Office of Research Infrastructure under award number S10OD018522, he National Institutes of Health.
  • Contact: Christopher R Gignoux chris.gignoux _at_ ucdenver.edu | Eimear E. Kenny eimear.kenny _at_ mssm.edu
  • Collection: -

Publications

Wojcik GL, Fuchsberger C, Taliun D, Welch R, Martin AR, Shringarpure S, Carlson CS, Abecasis G, Kang HM, Boehnke M, Bustamante CD, Gignoux CR, Kenny EE "Imputation-Aware Tag SNP Selection To Improve Power for Large-Scale, Multi-ethnic Association Studies." G3 (Bethesda). 2018 Oct 3;8(10):3255-3267. https://doi.org/10.1534/g3.118.200502
PMID: 30131328
PMCID: PMC6169386

Download and documentation


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