mendel-gpu

A tool for genotype imputation. The mendel-gpu algorithm uses linkage disequilibrium patterns in unrelated subjects and runs in AMD and Nvidia GPUs.

Topic

Population genetics

Details

Operation: Imputation
Software interface: Command-line user interface
Language: OpenCL;Fortran;C++
Operating system: Linux
License: Not stated

Cost

Version name: -

Maturity:

Credit: -
Contact: Chen GK gary.k.chen _at_ usc.edu
Collection: -

Publications

Chen GK, Wang K, Stram AH, Sobel EM, Lange K "Mendel-GPU: haplotyping and genotype imputation on graphics processing units." Bioinformatics. 2012 Nov 15;28(22):2979-80. Epub 2012 Sep 5. https://doi.org/10.1093/bioinformatics/bts536
PMID: 22954633
PMCID: PMC3634317

Download and documentation

Source: https://storage.googleapis.com/google-co
de-archive-source/v2/code.google.com
/mendel-gpu/source-archive.zip
Documentation: https://code.google.com/archive/p/mendel
-gpu/wikis
Home page: https://code.google.com/p/mendel-gpu/

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