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A tool aimed for aiding a development of multiple sequence alignment methods. It generates randomized versions of input sequences preserving its essential features.


Analysis; sequence analysis; sequence alignment analysis; sequence alignment validation


  • Operation: Sequence alignment; Modelling and simulation; Multiple sequence alignment
  • Software interface: Command-line interface
  • Language: Perl
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Credit: -
  • Contact: uri _at_
  • Collection: -


Ng P, Keich U "Alignment Constrained Sampling." J Comput Biol. 2011 Feb;18(2):155-68
PMID: 21314455

Download and documentation

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