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GISMO

Bayesian Markov chain Monte Carlo (MCMC) sampler for protein multiple sequence alignment (MSA).

Topic

Sequence analysis; Proteins

Details

Operation: Multiple sequence alignment
Software interface: Command-line user interface
Language: C++
Operating system: Linux; Mac OS X
License: Not stated

Cost

Version name: -

Credit: -
Contact: aneuwald _at_ som.umaryland.edu
Collection: -

Publications

Neuwald AF, Altschul SF "Bayesian Top-Down Protein Sequence Alignment with Inferred Position-Specific Gap Penalties." PLoS Comput Biol. 2016 May 18;12(5):e1004936. https://doi.org/10.1371/journal.pcbi.1004936
PMID: 27192614
PMCID: PMC4871425

Download and documentation

Source: http://gismo.igs.umaryland.edu/
Documentation: http://gismo.igs.umaryland.edu/downloads
/readme
Home page: http://gismo.igs.umaryland.edu/

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