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MSAProbs-MPI

MSAProbs-MPI

A parallel version of MSAProbs multiple sequence (MSA) alignment tool. The method is based on hidden Markov models. See LINKS on this page for more information about MSAProbs.

Topic

Sequence analysis

Details

  • Operation: Multiple sequence alignment
  • Input: FASTA
  • Output: FASTA; CLUSTALW
  • Software interface: Command-line user interface
  • Language: C++
  • Operating system: Linux, Mac OS X
  • License: Not stated
  • Cost: -
  • Version name: 1.0.5
  • Credit: -
  • Contact: Jorge González-Domínguez jgonzalezd _at_ udc.es
  • Collection: -

Publications

Jorge González-Domínguez, Yongchao Liu, Juan Touriño, Bertil Schmidt "MSAProbs-MPI: parallel multiple sequence aligner for distributed-memory systems" Bioinformatics, Volume 32, Issue 24, 15 December 2016, Pages 3826–3828 https://doi.org/10.1093/bioinformatics/btw558
PMID: 27638400


Download and documentation








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