PROMALS (Profile Multiple Alignment with Local Structure) is a web-based tool for the construction of multiple sequence alignments (MSA). It searches both sequence and structure databases and uses that information together with user-defined constraints.
Structure prediction; Protein secondary structure; Proteins; Structure analysis; Sequence analysis
Pei J, Grishin NV "PROMALS3D: multiple protein sequence alignment enhanced with evolutionary and three-dimensional structural information." Methods Mol Biol. 2014;1079:263-71. https://doi.org/10.1007/978-1-62703-646-7_17
PMID: 24170408
PMCID: PMC4506754
Pei J, Kim BH, Grishin NV "PROMALS3D: a tool for multiple protein sequence and structure alignments." Nucleic Acids Res. 2008 Apr;36(7):2295-300. https://doi.org/10.1093/nar/gkn072
PMID: 18287115
PMCID: PMC2367709
Pei J, Tang M, Grishin NV "PROMALS3D web server for accurate multiple protein sequence and structure alignments." Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W30-4. https://doi.org/10.1093/nar/gkn322
PMID: 18503087
PMCID: PMC2447800
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