GARN / GARN2 (Game Algorithm for RNa sampling) is a tool to compute RNA 3D structures from a secondary structure. The GARN algorithm uses a regret minimization method.
RNA; Structure prediction; Nucleic acid structure analysis
Boudard M, Bernauer J, Barth D, Cohen J, Denise A "GARN: Sampling RNA 3D Structure Space with Game Theory and Knowledge-Based Scoring Strategies." PLoS One, 2015 https://doi.org/10.1371/journal.pone.0136444
PMID: 26313379
PMCID: PMC4551674
Boudard M, Barth D, Bernauer J, Denise A, Cohen J "GARN2: coarse-grained prediction of 3D structure of large RNA molecules by regret minimization." Bioinformatics, 2017 https://doi.org/N10.1093/bioinformatics/btx175
PMID: 28398456
PMCID: None
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