Stitchprofiles.uio.no is a web-based tool to predict DNA melting. Stitchprofiles.uio.no computes stitch profiles, melting curves, probability profiles, temperature profiles, loop entropies, and plots profile diagrams, visualizes DNA conformations with probabilities.
Nucleic acid structure analysis; DNA; Statistics and probability; Software engineering; Structure prediction
Tøstesen E, Jerstad GI, Hovig E "Stitchprofiles.uio.no: analysis of partly melted DNA conformations using stitch profiles." Nucleic Acids Res. 2005; 33(Web Server issue):W573-6 https://doi.org/10.1093/nar/gki424
PMID: 15980539
PMCID: PMC1160185
Tøstesen E "Partly melted DNA conformations obtained with a probability peak finding method." Phys Rev E Stat Nonlin Soft Matter Phys, 2005 https://doi.org/10.1103/PhysRevE.71.061922
PMID: 16089780
PMCID: None
Tøstesen E "A stitch in time: efficient computation of genomic DNA melting bubbles." Algorithms Mol Biol, 2008 https://doi.org/10.1186/1748-7188-3-10
PMID: 18637171
PMCID: PMC2553405
Liu F, Tøstesen E, Sundet JK, Jenssen TK, Bock C, Jerstad GI, Thilly WG, Hovig E "The human genomic melting map." PLoS Comput Biol, 2007 https://doi.org/10.1371/journal.pcbi.0030093
PMID: 17511513
PMCID: PMC1868775
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