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supernmotifs

supernmotifs

super-n-motifs is a tool to compare secondary linear and circular RNA structures. super-n-motifs algorithm accounts for pseudoknot, G4 motifs, and uses an alignment-free method.

Topic

Nucleic acid structure analysis; RNA; Nucleic acid sites, features and motifs

Details

  • Operation: RNA secondary structure prediction; Structure comparison
  • Software interface: Command-line user interface
  • Language: C++
  • Operating system: Linux
  • License: GNU General Public License v3
  • Cost: Free
  • Version name: 1.2
  • Credit: The Fonds de Recherche du Québec—Nature et Technologies (FRQ-NT), the Université de Sherbrooke Research Chair on RNA Structure and Genomics, the Natural Sciences and Engineering Research Council of Canada, the Canada Foundation for Innovation (CFI), NanoQuébec, RMGA, the FRQ-NT.
  • Contact: Shengrui.Wang _at_ Usherbrooke.ca
  • Collection: -

Publications

Glouzon JS, Perreault JP, Wang S "The super-n-motifs model: a novel alignment-free approach for representing and comparing RNA secondary structures." Bioinformatics, 2017 https://doi.org/10.1093/bioinformatics/btw773
PMID: 28088762
PMCID: None


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