super-n-motifs is a tool to compare secondary linear and circular RNA structures. super-n-motifs algorithm accounts for pseudoknot, G4 motifs, and uses an alignment-free method.
Nucleic acid structure analysis; RNA; Nucleic acid sites, features and motifs
Glouzon JS, Perreault JP, Wang S "The super-n-motifs model: a novel alignment-free approach for representing and comparing RNA secondary structures." Bioinformatics, 2017 https://doi.org/10.1093/bioinformatics/btw773
PMID: 28088762
PMCID: None
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