CPM (Continuous Profile Models) is a Matlab tool to normalize and align LC-MS(/MS) time-series data. The toolbox includes EM-CPM and HB-CPM models.
Proteomics experiment
Listgarten J, Neal RM, Roweis ST, Wong P, Emili A "Difference detection in LC-MS data for protein biomarker discovery." Bioinformatics 2007; 23(2):e198-204 https://doi.org/10.1093/bioinformatics/btl326
PMID: 17237092
Listgarten J, Emili A "Statistical and computational methods for comparative proteomic profiling using liquid chromatography-tandem mass spectrometry." Mol Cell Proteomics, 2005 https://doi.org/10.1074/mcp.R500005-MCP200
PMID: 15741312
Jennifer Listgarten, Radford M. Neal, Sam T. Roweis, Rachel Puckrin, Sean Cutler "Bayesian Detection of Infrequent Differences in Sets of Time Series with Shared Structure" Advances in Neural Information Processing Systems 19: Proceedings of the 2006 Conference, eds. Bernhard Schölkopf, John Platt, Thomas Hofmann https://doi.org/10.7551/mitpress/7503.003.0118
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