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DeNovoGUI

DeNovoGUI

DeNovoGUI is a tool to run PepNovo+, DirecTag, PepNovo+, and pNovo+de novo MS/MS spectra sequencing tools.

Topic

Proteomics; Proteomics experiment

Details

  • Operation: Protein identification; Validation of peptide-spectrum matches; Peptide identification; de Novo sequencing
  • Input: MGF (Mascot Generic File format)
  • Output: TXT
  • Software interface: Command-line user interface; Graphical user interface
  • Language: Java
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Apache License v2
  • Cost: Free
  • Version name: 1.16.6
  • Credit: The Max Planck Society, the Austrian Science FundingAgency, Ghent University (Multidisciplinary Research Partnership “Bioinformatics:from nucleotides to networks”), the European Union 7th Framework Program, the Research Council of Norway.
  • Contact: marc.vaudel _at_ biomed.uib.no
  • Collection: -

Publications

Muth T, Weilnbock L, Rapp E, Huber CG, Martens L, Vaudel M, Barsnes H "DeNovoGUI: an open source graphical user interface for de novo sequencing of tandem mass spectra." J Proteome Res. 2014 Feb 7;13(2):1143-6. https://doi.org/10.1021/pr4008078
PMID: 24295440
PMCID: PMC3923451


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