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DeconTools
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DeconTools

DeconTools (Decon2LS) is a software tool package for de-isotoping and feature detection in mass spectrometry (MS) data. The DeconTools algorithm includes functions for peak detection, noise reduction, prediction of a theoretical isotopic envelope, and scoring functions.DeconTools is available as graphical user interphase (GUI) version (DeconToolsAutoProcessor) and as a command-line version (DeconConsole).



DeconTools

DeconTools (Decon2LS) is a software tool package for de-isotoping and feature detection in mass spectrometry (MS) data. The DeconTools algorithm includes functions for peak detection, noise reduction, prediction of a theoretical isotopic envelope, and scoring functions.DeconTools is available as graphical user interphase (GUI) version (DeconToolsAutoProcessor) and as a command-line version (DeconConsole).

Topic

Proteomics; Proteomics experiment

Details

  • Operation: Peak detection; Mass spectrum visualisation; Chromatogram visualisation; Isotopic distributions calculation; Deisotoping
  • Input: mzXML, mzML, mz5,Thermo Finnigan .Raw files, Agilent .D folders, Bruker acqu files, IMS .IMF and .UIMF files
  • Output: CSV
  • Software interface: Command-line user interface; Graphical user interface | graphical user interface
  • Language: C++;C#
  • Operating system: Microsoft Windows
  • License: Apache License v2
    • Cost: Free
  • Version name: 1.1.7370
  • Credit: The National Institutes of Health (NIH)
  • Contact: proteomics _at_ pnl.gov | matthew.monroe _at_ pnnl.gov
  • Collection: -

Publications

Horn DM, Zubarev RA, McLafferty FW "Automated reduction and interpretation of high resolution electrospray mass spectra of large molecules." J. Am. Soc. Mass Spectrom. 2000; 11(4):320-32 https://doi.org/10.1016/s1044-0305(99)00157-9
PMID: 10757168


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