MzJava is a tool for the analysis of mass spectrometry data from proteomics and glycomics experiments. MzJava package includes functions for processing fragmentation mass spectra (MSn) and associated molecules, numerous functions for cleaning and transforming MSn spectra, clustering, computation of consensus spectra, contains classes to store peptides and glycans with modifications or substituents, mass calculations and matching to experimental, data import and export.
Proteomics; Proteomics experiment
Oliver Horlacher, Frederic Nikitin, Davide Alocci, Julien Mariethoz, Markus Müller, Frederique Lisacek "MzJava: An open source library for mass spectrometry data processing" J Proteomics 2015 Nov 3;129, 63-70 https://doi.org/10.1016/j.jprot.2015.06.013
PMID: 26141507
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