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Tally

Tally

Tally is a tool to validate the quality of detection of tandem repeats in protein sequences. The Tally algorithm uses machine learning and outputs various scores, such as entropy, Psim, p-value-phylo, and parsimony.

Topic

Sequencing

Details

  • Operation: Read pre-processing; Sequence redundancy removal; Sequence contamination filtering
  • Input: MSA, FASTA, Fastally
  • Output: -
  • Software interface: Web user interface
  • Language: Python;C
  • Operating system: Linux; Mac OS X
  • License: GNU General Public License v3
  • Cost: Free
  • Version name: -
  • Maturity: Mature
  • Credit: The H2020-MSCA-RISE project REFRACT, the National Institute of Allergy and Infectious Diseases, the Ministry of Education, Science and Technological Development, Republic of Serbia. Ministere de l Enseignement superieur et de la Recherche (MESR), Fondation pour la Recherche Médicale, ANR investissement d avenir en bioinformatique-projet-IBC
  • Contact: Andrey.Kajava _at_ crbm.cnrs.fr;Christian.Lepeuch _at_ crbm.cnrs.fr;julien.jorda _at_ crbm.cnrs.fr
  • Collection: -

Publications

Richard FD, Alves R, Kajava AV "Tally: a scoring tool for boundary determination between repetitive and non-repetitive protein sequences." Bioinformatics, 2016 https://doi.org/10.1093/bioinformatics/btw118
PMID: 27153701
PMCID: None


Perovic V, Leclercq JY, Sumonja N, Richard FD, Veljkovic N, Kajava AV "Tally-2.0: upgraded validator of tandem repeat detection in protein sequences." Bioinformatics, 2020 https://doi.org/10.1093/bioinformatics/btaa121
PMID: 32096820
PMCID: PMC7214015


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