compareMS2 is a tool to calculate overlaps between two LC-MS/MS datasets. The compareMS2 algorithm uses the distribution of spectra dot products of tandem mass spectra collected from two samples compute shared peptides and converts it to distance metric.
Proteomics; Proteomics experiment
Palmblad M, Deelder AM "Molecular phylogenetics by direct comparison of tandem mass spectra." Rapid Commun. Mass Spectrom. 2012; 26(7):728-32 https://doi.org/10.1002/rcm.6162
PMID: 22368051
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