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pFind Studio

pFind Studio

pFind Studio is a tool to identify proteins using tandem mass spectrometry. The pFind Studio package has four automated workflows for varying requirements. Alternative name: Open-pFind.

Topic

Proteomics; Proteomics experiment

Details

  • Operation: Mass spectrum visualisation; Peptide identification; Protein quantification; Formatting
  • Software interface: Graphical user interface
  • Language: Java
  • Operating system: Microsoft Windows
  • License: Other
  • Cost: Free
  • Version name: 3.1.6
  • Maturity: Stable
  • Credit: The National Key Research and Development Program of China, the Youth Innovation Promotion Association CAS, the National Natural Science Foundation of China, the CAS Interdisciplinary Innovation Team, the International Collaboration Program, the Beijing Training Project for The Leading Talents in S and T.
  • Contact: pfind _at_ ict.ac.cn | Si-Min He smhe _at_ ict.ac.cn | Hao Chi chihao _at_ ict.ac.cn
  • Collection: -

Publications

Chi H, Liu C, Yang H, Zeng WF, Wu L, Zhou WJ, Wang RM, Niu XN, Ding YH, Zhang Y, Wang ZW, Chen ZL, Sun RX, Liu T, Tan GM, Dong MQ, Xu P, Zhang PH, He SM "Comprehensive identification of peptides in tandem mass spectra using an efficient open search engine" Nat Biotechnol. 2018 Oct https://doi.org/10.1038/nbt.4236
PMID: 30295672


Wang LH, Li DQ, Fu Y, Wang HP, Zhang JF, Yuan ZF, Sun RX, Zeng R, He SM, Gao W "pFind 2.0: a software package for peptide and protein identification via tandem mass spectrometry." Rapid Commun. Mass Spectrom. 2007; 21(18):2985-91 https://doi.org/10.1002/rcm.3173
PMID: 17702057


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