AfterQC is a tool for quality control of FASTQ data produced by HiSeq 2000/2500/3000/4000, Nextseq 500/550, MiniSeq, and Illumina 1.8 or newer. The algorithm has functions for trimming, filtering, and error correction. It also produces a report in HTML format. The Authors have re-implemented this tool in C++ as "fastp." See links.
Sequence analysis; Data quality management
Chen S, Huang T, Zhou Y, Han Y, Xu M, Gu J "AfterQC: automatic filtering, trimming, error removing and quality control for fastq data." BMC Bioinformatics. 2017 Mar 14;18(Suppl 3):80. https://doi.org/10.1186/s12859-017-1469-3
PMID: 28361673
PMCID: PMC5374548
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