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BIGpre

BIGpre

BIGpre is a tool to assess the quality of Illumina and 454 sequencing data. The BIGpre algorithm contains functions for correlation of forward and reverse sequenced reads, GC content, read quality, trimming, and filtering. It produces graphics by integrating R.

Topic

DNA; Genomics; Sequencing

Details

  • Operation: Sequencing quality control
  • Software interface: Command-line user interface
  • Language: Perl
  • Operating system: Linux
  • License: GNU General Public License v3
  • Cost: Free
  • Version name: 2.0.2
  • Maturity: Stable
  • Credit: The National Natural Science Foundation of China, he Knowledge Innovation Program of the Chinese Academy of Sciences.
  • Contact: Tongwu Zhang zhangt _at_ hku.hk | Tongwu Zhang zhangtw _at_ big.ac.cn | Songnian Hu husn _at_ big.ac.cn
  • Collection: -

Publications

Zhang T, Luo Y, Liu K, Pan L, Zhang B, Yu J, Hu S "BIGpre: a quality assessment package for next-generation sequencing data." Genomics Proteomics Bioinformatics. 2011 Dec;9(6):238-44. 10.1016/S1672-0229(11)60027-2. https://doi.org/10.1016/S1672-0229(11)60027-2
PMID: 22289480
PMCID: PMC5054156


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