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BSeq-sc

BSeq-sc

BSeq-sc is a pipeline tool for the estimation of differential expression and cell types from single-cell RNA-seq data as bulk tissue samples.

Topic

Gene expression; RNA-seq

Details

  • Operation: RNA-Seq analysis
  • Software interface: Command-line user interface; Library
  • Language: R
  • Operating system: Microsoft Windows, Mac OS X, Linux
  • License: GNU General Public License v>=2
  • Cost: Free
  • Version name: 1.0
  • Credit: The European Molecular Biology Organization (EMBO).
  • Contact: Renaud Gaujoux renaud _at_ tx.technion.ac.il
  • Collection: -

Publications

Baron M, Veres A, Wolock SL, Faust AL, Gaujoux R, Vetere A, Ryu JH, Wagner BK, Shen-Orr SS, Klein AM, Melton DA, Yanai I "A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell Population Structure." Cell Syst. 2016 Oct 26;3(4):346-360.e4. 2016 Sep 22. https://doi.org/10.1016/j.cels.2016.08.011
PMID: 27667365
PMCID: PMC5228327


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