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BackSPIN

BackSPIN

BackSPIN is a tool for clustering RNA-seq data. The BackSPIN algorithm, based on SPIN, is a divisive biclustering method.

Topic

Gene expression; RNA-seq

Details

  • Operation: RNA-Seq analysis
  • Software interface: Command-line user interface
  • Language: Python
  • Operating system: Microsoft Windows, Mac OS X, Linux
  • License: BSD 2-Clause "Simplified" License
  • Cost: Free
  • Version name: 0.2.0
  • Credit: -
  • Contact: Linnarsson Sten sten.linnarsson _at_ ki.se | Hjerling-Leffler Jens jens.hjerling-leffler _at_ ki.se
  • Collection: -

Publications

Zeisel A, Munoz-Manchado AB, Codeluppi S, Lonnerberg P, La Manno G, Jureus A, Marques S, Munguba H, He L, Betsholtz C, Rolny C, Castelo-Branco G, Hjerling-Leffler J, Linnarsson S "Brain structure. Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq." Science. 2015 Mar 6;347(6226):1138-42. Feb 19. https://doi.org/10.1126/science.aaa1934
PMID: 25700174


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