A tool for assembling transcriptome sequences and estimating expression levels in RNA-seq data. The CEM algorithm uses a quasi-multinomial distribution model to detect RNA-seq biases, such as mappability and positional sequencing biases.
Transcriptomics; Sequence assembly; RNA-Seq
Li W, Jiang T "Transcriptome assembly and isoform expression level estimation from biased RNA-Seq reads." Bioinformatics. 2012 Nov 15;28(22):2914-21. Epub 2012 Oct 11. https://doi.org/10.1093/bioinformatics/bts559
PMID: 23060617
PMCID: PMC3496342
If you find errors, please report here.
SECTIONS
TutorialsFind thousands of Bioinformatics and Life Science software tools and databases in the newly launched
Ads