CIDR (Clustering through Imputation and Dimensionality Reduction) is an R tool to reduce the dimensionality and clustering of single-cell RNA-seq data. The CIDR algorithm uses an ‘implicit imputation’ method to deal with dropouts.
RNA-seq; Gene expression; Transcriptomics
Lin P, Troup M, Ho JW "CIDR: Ultrafast and accurate clustering through imputation for single-cell RNA-seq data." Genome Biol. 2017 Mar 28;18(1):59. https://doi.org/10.1186/s13059-017-1188-0
PMID: 28351406
PMCID: PMC5371246
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