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CNNC

CNNC

CNNC is a tool for co-expression analysis of single-cell RNA-seq data. The CNNC algorithm implements a Convolutional neural network for the purpose.

Topic

Gene expression; RNA-Seq

Details

  • Operation: RNA-Seq analysis
  • Software interface: Command-line user interface
  • Language: Python
  • Operating system: Microsoft Windows, Mac OS X, Linux
  • License: The MIT License
  • Cost: Free
  • Version name: -
  • Credit: The National Institutes of Health (NIH), US National Science Foundation, James S. McDonnell Foundation.
  • Contact: Ziv Bar-Joseph zivbj _at_ cs.cmu.edu
  • Collection: -

Publications

Ye Yuan, Ziv Bar-Joseph "Deep learning for inferring gene relationships from single-cell expression data" biorxiv.org (2019) https://doi.org/10.1101/365007


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