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CRAC

CRAC

CRAC is a tool to map RNA-seq reads. The CRAC algorithm uses a k-mer profiling approach to identify substitutions, insertions/deletions (indels), and chimeric junctions.

Topic

RNA splicing; Gene structure; RNA-seq

Details

  • Operation: Genome indexing; RNA-Seq quantification; Read mapping
  • Software interface: Command-line user interface
  • Language: R, Python
  • Operating system: Linux; Mac OS X
  • License: Mature
  • Cost: Free
  • Version name: 2.5.2
  • Credit: Foundation ARC pour la Recherche sur le Cancer, Ligue Contre le Cancer, CNRS INS2I, the Institute of Computational Biology, Investissement dAvenir, Region Languedoc Roussillon, the French ANR-2010-COSI-004 MAPPI Project, University of Montpellier, Agence Nationale de la Recherche, NUMEV Labex, the CNRS Mastodons Program.
  • Contact: crac-bugs _at_ lists.gforge.inria.fr | crac-article _at_ lists.gforge.inria.fr
  • Collection: -

Publications

Philippe N, Salson M, Commes T, Rivals E "CRAC: an integrated approach to the analysis of RNA-seq reads." Genome Biol. 2013 Mar 28;14(3):R30. https://doi.org/10.1186/gb-2013-14-3-r30
PMID: 23537109
PMCID: PMC4053775


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