A tool for the classification of cells in single-cell RNA-seq data. The CaSTLe algorithm applies information transferred from past experiments with similar cell types and the XGBoost classification model to label cells.
Transcriptomics; RNA-seq
Lieberman Y, Rokach L, Shay T "CaSTLe - Classification of single cells by transfer learning: Harnessing the power of publicly available single cell RNA sequencing experiments to annotate new experiments." PLoS One. 2018 Oct 10;13(10):e0205499. eCollection 2018. https://doi.org/10.1371/journal.pone.0205499
PMID: 30304022
PMCID: PMC6179251
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