CellBIC

CellBIC is a tool for clustering single-cell RNA-seq data. The CellBIC algorithm does top-down hierarchical clustering.

Topic

Gene expression; RNA-seq

Details

Operation: RNA-Seq analysis; Clustering
Software interface: Command-line user interface
Language: MATLAB
Operating system: Microsoft Windows, Mac OS X, Linux
License: Not stated

Cost

Version name: 1.1

Maturity:

Credit: American Diabetes Association, The National Institutes of Health (NIH), National Center for Advancing Translational Sciences, Institute for Translational Medicine and Therapeutics (ITMAT), Transdisciplinary Program in Translational Medicine and Therapeutics, Functional Genomics Core of the Penn Diabetes Research Center.
Contact: Diana E Stanescu stanescud _at_ email.chop.edu | Kyoung Jae Won kyoung.won _at_ bric.ku.dk
Collection: -

Publications

Kim J, Stanescu DE, Won KJ "CellBIC: bimodality-based top-down clustering of single-cell RNA sequencing data reveals hierarchical structure of the cell type." Nucleic Acids Res. 2018 Nov 30;46(21):e124. https://doi.org/10.1093/nar/gky698
PMID: 30102368
PMCID: PMC6265269