For better experience, turn on JavaScript!


Cell BLAST

Cell BLAST

Cell BLAST is a tool for searching single-cell RNA-seq databases and annotation of RNA-seq data. Apart from the standalone version, there is also a web server http://cblast.gao-lab.org (see links).

Topic

Gene expression; RNA-seq

Details

  • Operation: RNA-Seq analysis; Annotation; Query and retrieval
  • Software interface: Command-line user interface; Web user interface
  • Language: Python
  • Operating system: Linix; Mac OS X; Microsoft Windows
  • License: The MIT License
  • Cost: Free
  • Version name: 0.2.14
  • Credit: The National Key Research and Development Program, the China 863 Program, the State Key Laboratory of Protein and Plant Gene Research, the Beijing Advanced Innovation Center for Genomics (ICG) at Peking University.
  • Contact: cblast _at_ mail.cbi.pku.edu.cn
  • Collection: -

Publications

Cao Zhi-Jie, Wei Lin, Lu Shen, Yang De-Chang, Gao Ge "Cell BLAST: Searching large-scale scRNA-seq databases via unbiased cell embedding" bioRxiv https://doi.org/10.1101/587360


Download and documentation








If you find errors, please report here.