CellFishing

CellFishing (cell finder via hashing) is a tool for discovering cells that are alike in large-scale RNA-seq data.

Topic

Gene expression; RNA-seq

Details

Operation: Classification
Software interface: Command-line user interface
Language: Julia
Operating system: Mac OS X, Linux
License: The MIT License

Cost

Version name: -

Maturity:

Credit: MEXT KAKENHI, the Projects for Technological Development, Research Center Network for Realization of Regenerative Medicine by Japan, the Japan Agency for Medical Research and Development (AMED), JST CREST, Japan.
Contact: Kenta Sato bicycle1885 _at_ gmail.com
Collection: -

Publications

Sato K, Tsuyuzaki K, Shimizu K, Nikaido I "CellFishing.jl: an ultrafast and scalable cell search method for single-cell RNA sequencing." Genome Biol. 2019 Feb 11;20(1):31. https://doi.org/10.1186/s13059-019-1639-x
PMID: 30744683
PMCID: PMC6371477

Download and documentation

Source: https://github.com/bicycle1885/CellFishi
ng.jl
Documentation: https://github.com/bicycle1885/CellFishi
ng.jl/blob/master/README.md
Home page: https://github.com/bicycle1885/CellFishi
ng.jl

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CellFishing

CellFishing

Topic

Details

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Download and documentation

TOOLS

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