CellRanger is a tool for sequence read alignment, clustering, gene expression analysis, and generation of gene-cell matrices from Chromium single cell 3’ RNA-seq data.
Gene expression; RNA-seq
Zheng GX, Terry JM, Belgrader P, Ryvkin P, Bent ZW, Wilson R, Ziraldo SB, Wheeler TD, McDermott GP, Zhu J, Gregory MT, Shuga J, Montesclaros L, Underwood JG, Masquelier DA, Nishimura SY, Schnall-Levin M, Wyatt PW, Hindson CM, Bharadwaj R, Wong A, Ness KD, Beppu LW, Deeg HJ, McFarland C, Loeb KR, Valente WJ, Ericson NG, Stevens EA, Radich JP, Mikkelsen TS, Hindson BJ, Bielas JH "Massively parallel digital transcriptional profiling of single cells." Nat Commun. 2017 Jan 16;8:14049. https://doi.org/10.1038/ncomms14049
PMID: 28091601
PMCID: PMC5241818
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