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CellView

CellView

CellView is a tool for the analysis of differential and co-expression patterns, and for viewing 3D representations of single-cell RNA-seq data. The CellView has functions for knowledge-based and hypothesis-driven investigations of data.

Topic

RNA-Seq; Cell biology; Data visualisation

Details

  • Operation: Sequence visualisation; RNA-Seq analysis
  • Input: .Rds
  • Output: -
  • Software interface: Command-line user interface; Library; Web user interface
  • Language: R Shiny
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: The MIT License
  • Cost: Free
  • Version name: -
  • Credit: The National Institute of Arthritis and Musculoskeletal and Skin Diseases (NIAMS), The Jackson Laboratory scientific services, Assistant Secretary of Defense for Health Affairs.
  • Contact: Mohan T. Bolisetty mohan.bolisetty _at_ jax.org | Paul Robson paul.robson _at_ jax.org
  • Collection: -

Publications

Mohan T. Bolisetty, Michael L. Stitzel, Paul Robson "CellView: Interactive exploration of high dimensional single cell RNA-seq data" biorxiv.org https://doi.org/10.1101/123810


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