For better experience, turn on JavaScript!


ClinQC

ClinQC

ClinQC is a pipeline tool to pre-process sequencing data from Sanger, 454, and Ion Torrent platforms. ClinQC has functions for format conversion, quality control, trimming, filtering, and reporting.

Topic

Sequencing; Quality affairs

Details

  • Operation: Sequencing quality control
  • Software interface: Command-line user interface
  • Language: Python;Java;Perl
  • Operating system: Linux; Mac OS X
  • License: GNU Lesser General Public License
  • Cost: Free
  • Version name: 1.1
  • Credit: Austrian Institute of Technology (AIT).
  • Contact: Ram Vinay Pandey ramvinay.pandey _at_ gmail.com
  • Collection: -

Publications

Pandey RV, Pabinger S, Kriegner A, Weinhausel A "ClinQC: a tool for quality control and cleaning of Sanger and NGS data in clinical research." BMC Bioinformatics. 2016 Feb 2;17:56. https://doi.org/10.1186/s12859-016-0915-y
PMID: 26830926
PMCID: PMC4735967


Download and documentation








If you find errors, please report here.