For better experience, turn on JavaScript!


ClusterMap

ClusterMap

ClusterMap is an R tool for the analysis of single-cell RNA-seq data. The ClusterMap algorithm uses hierarchical clustering and computes similarity scores, representing the match quality. The ClusterMap package also has visualization tools.

Topic

Sequencing; RNA-seq

Details

  • Operation: Sequence clustering; Comparison
  • Software interface: Command-line user interface; Library
  • Language: R
  • Operating system: Microsoft Windows, Mac OS X, Linux
  • License: The MIT License
  • Cost: Free
  • Version name: 0.1.0
  • Credit: Stowers Institute for Medical Research and State Key Laboratory of Experimental Hematology, Institute of Hematology and Blood Disease Hospital, Center for Stem Cell Medicine, Chinese Academy of Medical Sciences & Peking Union Medical College.
  • Contact: Xin Gao gaoxin1 _at_ ihcams.ac.cn | Hua Li hul _at_ stowers.org
  • Collection: -

Publications

Gao X, Hu D, Gogol M, Li H "ClusterMap: compare multiple single cell RNA-Seq datasets across different experimental conditions." Bioinformatics. 2019 Sep 1;35(17):3038-3045. https://doi.org/10.1093/bioinformatics/btz024
PMID: 30649203


Download and documentation








If you find errors, please report here.