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ConDeTri

ConDeTri is a tool to filter sequencing errors and trim Illumina RNA-seq and DNA sequencing data.

Topic

RNA-Seq; Sequencing; Genomics

Details

Operation: Sequence trimming
Software interface: Command-line user interface
Language: Perl
Operating system: Linux; Mac OS X; Microsoft Windows
License: Not stated

Cost

Version name: -

Maturity:

Credit: The Swedish Research Council.
Contact: Axel Kunstner axel.kunstner _at_ ebc.uu.se
Collection: -

Publications

Smeds L, Künstner A "ConDeTri--a content dependent read trimmer for Illumina data." PLoS ONE 2011; 6(10):e26314 https://doi.org/10.1371/journal.pone.0026314
PMID: 22039460
PMCID: PMC3198461

Download and documentation

Source: https://github.com/linneas/condetri
Documentation: https://github.com/linneas/condetri/blob
/master/MANUAL_ConDeTri.pdf
Home page: http://code.google.com/p/condetri/

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