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Conos

Conos

Conos is a tool to analyze heterogeneous single-cell RNA-seq datasets. The Conos algorithm estimates multiple inter-sample mappings to compute a graph over cells that identify cell clusters and information proliferation.

Topic

Gene expression; RNA-seq

Details

  • Operation: RNA-Seq analysis; Classification
  • Software interface: Command-line user interface; Library
  • Language: C++;R
  • Operating system: Microsoft Windows, Mac OS X, Linux
  • License: GNU General Public License v3
  • Cost: Free
  • Version name: 1.1.2
  • Maturity: Stable
  • Credit: R01 HL131768/HL/NHLBI NIH HHS/United States
  • Contact: Peter Kharchenko peter_kharchenko _at_ hms.harvard.edu | Nikolas Barkas nikolas_barkas _at_ hms.harvard.edu | Viktor Petukhov viktor.s.petuhov _at_ ya.ru
  • Collection: -

Publications

Barkas N, Petukhov V, Nikolaeva D, Lozinsky Y, Demharter S, Khodosevich K, Kharchenko PV "Joint analysis of heterogeneous single-cell RNA-seq dataset collections." Nat Methods. 2019 Aug;16(8):695-698. Jul 15. https://doi.org/10.1038/s41592-019-0466-z
PMID: 31308548
PMCID: PMC6684315


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