CracTools provides a set of command-line tools for the analysis of single nucleotide variation (SNV), insertions/deletions (indels), splice junctions, chimeric reads in RNA-seq data.
Pipelines; RNA-seq; RNA-seq; RNA
Philippe N, Bou Samra E, Boureux A, Mancheron A, Rufflé F, Bai Q, De Vos J, Rivals E, Commes T "Combining DGE and RNA-sequencing data to identify new polyA+ non-coding transcripts in the human genome." Nucleic Acids Res. 2014; 42(5):2820-32 https://doi.org/10.1093/nar/gkt1300
PMID: 24357408
PMCID: PMC3950697
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