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DAVID Bioinformatics Resources

DAVID Bioinformatics Resources

DAVID Bioinformatics Resources (Database for Annotation, Visualization, and Integrated Discovery ) is a large resource for visualization, functional annotation, and clustering tools using such databases as GO , KEGG pathways, Biocarta, UniProt/SwissProt.

Topic

Pathology; Molecular interactions, pathways and networks; Mapping; Database management; Data mining

Details

  • Operation: Annotation; Enrichment analysis; Classification; Gene expression analysis; Gene functional annotation
  • Software interface: Web user interface
  • Language: -
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Other
  • Cost: Free
  • Version name: 6.8
  • Maturity: Mature
  • Credit: The National Institute of Allergy and Infectious Disease, National Cancer Institute, National Institutes of Health.
  • Contact: Brad T. Sherman bsherman _at_ mail.nih.gov
  • Collection: -

Publications

Huang DW, Sherman BT, Tan Q, Kir J, Liu D, Bryant D, Guo Y, Stephens R, Baseler MW, Lane HC, Lempicki RA "DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists." Nucleic Acids Res. 2007 Jul;35(Web Server issue):W169-75. 10.1093/nar/gkm415. Epub 2007 Jun 18. https://doi.org/10.1093/nar/gkm415
PMID: 17576678
PMCID: PMC1933169


Dennis G Jr, Sherman BT, Hosack DA, Yang J, Gao W, Lane HC, Lempicki RA "DAVID: Database for Annotation, Visualization, and Integrated Discovery." Genome Biol. 2003;4(5):P3. Epub 2003 Apr 3. https://doi.org/-
PMID: 12734009


Huang da W, Sherman BT, Lempicki RA "Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources." Nat Protoc. 2009;4(1):44-57. https://doi.org/10.1038/nprot.2008.211
PMID: 19131956


Huang da W, Sherman BT, Lempicki RA "Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists." Nucleic Acids Res. 2009 Jan;37(1):1-13. https://doi.org/10.1093/nar/gkn923
PMID: 19033363
PMCID: PMC2615629


Sherman BT, Huang da W, Tan Q, Guo Y, Bour S, Liu D, Stephens R, Baseler MW, Lane HC, Lempicki RA "DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis." BMC Bioinformatics. 2007 Nov 2;8:426. https://doi.org/10.1186/1471-2105-8-426
PMID: 17980028
PMCID: PMC2186358


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