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DEApp
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DEApp

DEApp is a web-based tool for differential analysis of RNBA-seq data. It uses edgeR, Limma-Voom, and DESeq2 for cross-validation.



DEApp

DEApp is a web-based tool for differential analysis of RNBA-seq data. It uses edgeR, Limma-Voom, and DESeq2 for cross-validation.

Topic

Sequencing; RNA-Seq

Details

  • Operation: RNA-Seq analysis; Differential gene expression analysis
  • Input: Raw count results and experimental design information
  • Output: -
  • Software interface: Web user interface
  • Language: R/Shiny
  • Operating system: Microsoft Windows, Mac OS X, Linux
  • License: Not stated
    • Cost: Free
  • Version name: -
    • Maturity: Stable
  • Credit: the Biological Sciences Division at the University of Chicago, the Biological Sciences Division at the University of Chicago, the National Institutes of Health (NIH).
  • Contact: Jorge Andrade jandrade _at_ bsd.uchicago.edu
  • Collection: -

Publications

Li Y, Andrade J "DEApp: an interactive web interface for differential expression analysis of next generation sequence data." Source Code Biol Med. 2017 Feb 3;12:2. eCollection 2017. https://doi.org/10.1186/s13029-017-0063-4
PMID: 28174599
PMCID: PMC5291987


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