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DTWscore

DTWscore

DTWscore is a tool for the analysis of transcriptional heterogeneity in single-cell RNA-seq (scRNA-seq) time-series data.

Topic

RNA-seq; Transcriptomics; Gene expression

Details

  • Operation: RNA-Seq analysis
  • Software interface: Command-line user interface
  • Language: R
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
  • Cost: Free
  • Version name: 1.0
  • Credit: The China Natural Science Foundation, China Postdoctoral Science Foundation, Heilongjiang Postdoctoral Fund, Natural Science Foundation of Heilongjiang Province of China, Open Project Program of Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education of Jilin University, Open Project of State Key Laboratory of Urban Water Resource and Environment of Harbin Institute of Technology, the National High-Tech Research and Development Program (863) of China.
  • Contact: xiuruizhang _at_ hit.edu.cn | nanwang _at_ hit.edu.cn | deliangwu _at_ hit.edu.cn | yanghu _at_ hit.edu.cn | cpz _at_ hit.edu.cn | jiangqinghua _at_ hit.edu.cn | xuli _at_ hrbeu.edu.cn | ydwang _at_ hit.edu.cn | xiuruizhang _at_ hit.edu.cn
  • Collection: -

Publications

Wang Z, Jin S, Liu G, Zhang X, Wang N, Wu D, Hu Y, Zhang C, Jiang Q, Xu L, Wang Y "DTWscore: Differential Expression and Cell Clustering Analysis for Time-Series Single-Cell RNA-seq Data" BMC Bioinformatics. 2017 May 23;18(1):270. https://doi.org/10.1186/s12859-017-1647-3
PMID: 28535748
PMCID: PMC5442705


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