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DegPack

DegPack

DegPack is a web-based tool for the identification of differentially expressed genes in RNA-seq data. The DegPack algorithm uses PoissonSeq and SAMseq methods.

Topic

Sequencing; RNA-Seq

Details

  • Operation: RNA-Seq analysis; Differential gene expression analysis
  • Software interface: Web user interface
  • Language: Python
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Credit: The Next-GenerationBioGreen 21 Program, Rural Development Administration in Republic of Korea, the Bio & Medical TechnologyDevelopment Program of the National Research Foundation (NRF)funded by the Ministry of Science, ICT & Future Planning, Basic Sci-ence Research Program through the National Research Foundationof Korea (NRF) funded by the Ministry of Education.
  • Contact: Sun Kim sunkim.bioinfo _at_ snu.ac.kr | starjh _at_ snu.ac.kr
  • Collection: -

Publications

An J, Kim K, Chae H, Kim S "DegPack: a web package using a non-parametric and information theoretic algorithm to identify differentially expressed genes in multiclass RNA-seq samples." Methods. 2014 Oct 1;69(3):306-14. 26. https://doi.org/10.1016/j.ymeth.2014.06.004
PMID: 24981074


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