For better experience, turn on JavaScript!


DensityPath

DensityPath

DensityPath is a tool to reconstruct and visualize developmental cell trajectories in single-cell RNA-seq (scRNA-seq) datasets.

Topic

Cell biology; Transcriptomics; RNA-seq

Details

  • Operation: RNA-Seq analysis
  • Software interface: Command-line user interface
  • Language: R, Matlab
  • Operating system: Linux; Mac OS X
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Credit: National Natural Science Foundation of China, the Strategic Priority Research Program of Chinese Academy of Sciences, National Center for Mathematics and Interdisciplinary Sciences of Chinese Academy of Sciences, LSC of Chinese Academy of Sciences, the Youth Innovation Promotion Association of Chinese Academy of Sciences, Ohio State University for partially supporting this research, National Science Foundation.
  • Contact: Lin Wan lwan _at_ amss.ac.cn | Liang Ma mal _at_ big.ac.cn
  • Collection: -

Publications

Chen Z, An S, Bai X, Gong F, Ma L, Wan L "DensityPath: An Algorithm to Visualize and Reconstruct Cell State-Transition Path on Density Landscape for Single-Cell RNA Sequencing Data " Bioinformatics. 2019 Aug 1;35(15):2593-2601. https://doi.org/10.1093/bioinformatics/bty1009
PMID: 30535348


Download and documentation








If you find errors, please report here.