Dhaka is a tool to cluster and analyze single-cell RNA-seq (scRNA-seq) data. The Dhaka algorithm uses a variational autoencoder approach to reduce dimensionality. The method can also be applied to copy number variation (CNV).
Gene expression; RNA-seq
Rashid S, Shah S, Bar-Joseph Z, Pandya R "Dhaka: Variational Autoencoder for Unmasking Tumor Heterogeneity From Single Cell Genomic Data" Bioinformatics. 2019 Feb 15;btz095. https://doi.org/10.1093/bioinformatics/btz095
PMID: 30768159
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