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DigitalCellSorter

DigitalCellSorter

DigitalCellSorter, Polled Digital Cell Sorter (p-DCS) is a tool for the identification of hematological cell types in single-cell RNA-seq (scRNA-seq) data. The DigitalCellSorter algorithm uses a voting approach based on molecular signatures to determine cell types and computes an approval score.

Topic

RNA-seq

Details

  • Operation: RNA-Seq analysis; Classification
  • Software interface: Command-line user interface
  • Language: Python
  • Operating system: Linux
  • License: The MIT licence
  • Cost: Free
  • Version name: 1.1
  • Credit: National Institutes of Health (NIH).
  • Contact: domansk6 _at_ msu.edu | carlo _at_ pa.msu.edu | domansk6 _at_ msu.edu
  • Collection: -

Publications

Domanskyi S, Szedlak A, Hawkins NT, Wang J, Paternostro G, Piermarocchi C "Polled Digital Cell Sorter (p-DCS): Automatic Identification of Hematological Cell Types From Single Cell RNA-sequencing Clusters " BMC Bioinformatics. 2019 Jul 1;20(1):369. https://doi.org/10.1186/s12859-019-2951-x
PMID: 31262249
PMCID: PMC6604348


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