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DrSeq2
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DrSeq2

DrSeq2 is a tool for quality control and analysis of single-cell RNA-seq (scRNA-seq), scATAC-seq, Drop-ChIP, and epigenome data. The DrSeq2 package includes four types of QC analyses and several other analyses.



DrSeq2

DrSeq2 is a tool for quality control and analysis of single-cell RNA-seq (scRNA-seq), scATAC-seq, Drop-ChIP, and epigenome data. The DrSeq2 package includes four types of QC analyses and several other analyses.

Topic

RNA-seq

Details

  • Operation: RNA-Seq analysis; Sequencing quality control
  • Software interface: Command-line user interface
  • Language: Python
  • Operating system: Linux; Mac OS X
  • License: GNU General Public License v3
    • Cost: Free
  • Version name: -
  • Credit: National Natural Science Foundation of China, National Key Research and Development Program of China, Specialized Research Fund for the Doctoral Program of Higher Education, Program of Shanghai Academic Research Leader.
  • Contact: yzhang _at_ tongji.edu.cn
  • Collection: -

Publications

Zhao C, Hu S, Huo X, Zhang Y "Dr.seq2: A Quality Control and Analysis Pipeline for Parallel Single Cell Transcriptome and Epigenome Data" PLoS One. 2017 Jul 3;12(7):e0180583. https://doi.org/10.1371/journal.pone.0180583
PMID: 28671995
PMCID: PMC5495495


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