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EMEP

EMEP

EMEP (evolutionary multiobjective ensemble pruning) is a tool to cluster single-cell RNA-seq (scRNA-seq) data. The EMEP algorithm reduces the dimensionality and clusters the resulting subspaces into ensembles.

Topic

RNA-seq

Details

  • Operation: RNA-Seq analysis; Expression profile clustering
  • Software interface: Command-line user interface
  • Language: MATLAB
  • Operating system: Linux; Mac OS X; Microsoft Windows
  • License: Not stated
  • Cost: Free
  • Version name: -
  • Credit: the Research Grants Council of the Hong Kong Special Administrative Region, the National Natural Science Foundation of China, the NaturalScience Foundation of Jilin Province, the Fundamental Research Funds for the Central Universities.
  • Contact: lixt314 _at_ nenu.edu.cn | kc.w _at_ cityu.edu.hk
  • Collection: -

Publications

Li X, Zhang S, Wong KC "Single-cell RNA-seq Interpretations Using Evolutionary Multiobjective Ensemble Pruning" Bioinformatics. 2019 Aug 15;35(16):2809-2817. https://doi.org/10.1093/bioinformatics/bty1056
PMID: 30596898


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