EMSAR is a tool for transcript quantification of RNA-seq data. The EMSAR algorithm can use both single- and paired-end reads, it can operate in multi-thread mode, and reports Fragments per kilobase million Reads (FPKM).
Transcriptomics; Gene expression; RNA-seq
Lee S, Seo CH, Alver BH, Lee S, Park PJ "EMSAR: estimation of transcript abundance from RNA-seq data by mappability-based segmentation and reclustering." BMC Bioinformatics. 2015 Sep 3;16:278. https://doi.org/10.1186/s12859-015-0704-z
PMID: 26335049
PMCID: PMC4559005
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