EPIG-Seq is a tool to cluster co-expressed genes in RNA-seq data sets. The EPIG-Seq algorithm uses count correlation to estimate the gene similarity and to estimate differential expression level, it uses quasi-Poisson modeling and a location parameter.
RNA-seq; Oncology; Gene expression; Toxicology
Li J, Bushel PR "EPIG-Seq: extracting patterns and identifying co-expressed genes from RNA-Seq data." BMC Genomics 2016 https://doi.org/10.1186/S12864-016-2584-7
PMID: 27004791
PMCID: PMC4804494
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