FORKS (Finding Orderings Robustly using K-means and Steiner trees) is a tool to order cells pseudo-temporally and to infer bifurcating state trajectories.
RNA-seq
Mayank Sharma, Huipeng Li, Debarka Sengupta, Shyam Prabhakar, Jayadeva "FORKS: Finding Orderings Robustly using k-means and Steiner trees" bioRxiv https://doi.org/10.1101/132811
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